Dyw family of nucleic acid deaminases

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August undefined, 2024

Web(1 of 61) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order: 1559: Name: AT1G15510: Secondary Identifier: PAC:19651458: proteins; AT1G15510.1; transcripts; AT1G15510.1; Paste the following link ... WebDNA is a polymer of the four nucleotides A, C, G, and T, which are joined through a backbone of alternating phosphate and deoxyribose sugar residues. These nitrogen …

Pfam: Family: DYW_deaminase (PF14432)

WebNucleobase deaminases form an important part of the catabolic pathway and aid the salvage of nucleobases.5 Nucle-obase deamination is catalysed via metal-assisted … Web2 days ago · The Pfam domain consisting of proteins that were large in the Peepal tree genome included 3-Deoxy-D-manno-octulosonic-acid transferase, Ring finger domain, PPR repeat family, Helix-loop-helix DNA-binding protein, DYW family of nucleic acid deaminases, Lysine methyltransferase, Putative GTPase activating protein for Arf, … highlights downloader

A Conserved Glutamate Residue in the C-terminal

WebMar 9, 2013 · Nucleic acids are long, thread-like, molecule that are made up of chains of individual nucleotides that are found in all living animals, plants, bacteria and viruses. … WebMar 4, 2015 · This region has been identified as the “DYW family of nucleic acid deaminases” (Pfam 14432) and is referred to as the “DYW deaminase domain” in this … WebMar 24, 2024 · The RNA editing occurring in plant organellar genomes mainly involves the change of cytidine to uridine. This process involves a deamination reaction, with cytidine … highlights drawing

Nucleobase deaminases: a potential enzyme system for new …

Evolution of the deaminase fold and multiple origins of …

WebMar 24, 2024 · hirsutum genes were identified as encoding DYW deaminases belonging to the PPR family. Most of these proteins contained multiple PPR domains, and 190 proteins contained intact DYW deaminase domain structures. An analysis of the 227 predicted G. hirsutum DYW deaminases indicated that the number of amino acids in the protein … Webas the “DYW family of nucleic acid deaminases” (Pfam 14432) (17) and is referred to as the “DYW deaminase domain” in this work. There is mounting evidence that supports the role of the DYW deaminase domain as the catalytic component of the editing reaction. This region has canonical zinc bindingmotifs highlights dudenWebMar 19, 2024 · The deaminase superfamily encompasses zinc-dependent enzymes catalyzing the deamination of bases in free nucleotides and nucleic acids across diverse biological contexts (1–3).These include enzymes that are (i) primarily involved in the salvage of bases in free nucleotides, such as the cytidine deaminases (CDD/CDA) (), … small plastic ramps

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Dyw family of nucleic acid deaminases

An interbacterial DNA deaminase toxin directly mutagenizes

WebNov 5, 2013 · been identified as the DYW family of nucleic acid deaminases (Pfam: Pf14432). The entire region is referred to as the … WebMar 24, 2024 · The RNA editing occurring in plant organellar genomes mainly involves the change of cytidine to uridine. This process involves a deamination reaction, with cytidine deaminase as the catalyst. Pentatricopeptide repeat (PPR) proteins with a C-terminal DYW domain are reportedly associated with cytidine …

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WebPOPTR_0005s01450g PPR repeat family, DYW family of nucleic acid deaminases gene body + promoter Wallstawe CHH POPTR_0005s03560g lipoxygenase gene body Wallstawe CHH POPTR_0005s06330g mitogen-activated protein kinase gene body Wallstawe CpG POPTR_0005s08180g leucine-rich repeat (LRR) WebJan 8, 2024 · DYW family of nucleic acid deaminases. A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The …

WebThe term nucleic acid is the overall name for DNA and RNA, members of a family of biopolymers, [11] and is synonymous with polynucleotide. Nucleic acids were named for … WebRestriction of foreign DNA is a fundamental defense mechanism required for maintaining genomic stability and proper function of mammalian cells. APOBEC cytidine deaminases are crucial effector molecules involved in clearing pathogenic DNA of viruses and other microorganisms and improperly localized self-DNA (DNA leakages). Mastering the …

WebSep 2, 2011 · Of these nucleic acid deaminases, the tRNA adenosine deaminases, Tad2/TadA comprise the most widespread clade, and are found across bacteria and eukaryotes. ... The classical DYW family in plants and Laccaria contain an additional metal-binding cluster composed of two H residues and a C-terminal CxC motif. The … WebThis scenario potentially explains the origin of mutagenic AID/APOBEC-like deaminases, including novel versions from Caenorhabditis, Nematostella and diverse algae and a …

Web(1 of 66) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) C. clementina v1.0: 2565 …

http://pfam-legacy.xfam.org/family/PF14432.3#:~:text=DYW%20family%20of%20nucleic%20acid%20deaminases%20Provide%20feedback,by%20numerous%20C%20to%20U%20editing%20events%20%5B1%2C3%2C4%5D. small plastic rectangular planter small plastic ramekinsWeb(1 of 83) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) S. purpurea v1.0: 2097 … small plastic reduction gearsWeb(1 of 78) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order: 1681: Name: Manes.01G168100: Secondary Identifier: PAC:32359906: proteins; Manes.01G168100.1.p; transcripts; Manes.01G168100.1; Paste the following link ... small plastic ratshttp://nucleic.org/ highlights dublinWebHarold C. Smith, in Methods in Enzymology, 2007 Abstract. Cytidine deaminases with the capacity to act on nucleic acids play a critical role in regulating the proteome through … highlights dubrovnikWebNov 5, 2013 · The deaminase fold is represented by sequences composed of part of the E, the entire E+, and most of the DYW domain, and has been identified as the DYW family … small plastic rectangular containers supplier